Tools

miRCat, A comprehensive miRNA target identification tool

For more information, please click this link here: http://www.mirna.org

SimITK/SimVTK

SimITK/SimVTK environment is developed for image analysis, visualization, and image-guided surgery.SimITK/VTK is an implementation of the ITK and VTK C++ libraries in MATLAB, specifically the Simulink visual programming environment.The advantage to this visual programming approach, compared to scripting or C++ applications, are short development times and high maintailabilty due to the existence of pre-built SimITK/VTK models.SimITK/VTK also generates the Simulink blocks directly from the library source files via custom-written automated processes specifically tailored to each library. This ensures that the final blocks parallel their written-code equivalents.The main interest of this project is image-guided therapy. To support this, SimVTK blocks are available for surgical tracking devices and ultrasound video acquisition.

For more information, Please click on the link here: http://www.simitkvtk.com/

Protein-interaction-network-based pathway analysis (PINBPA)

Protein-interaction-network-based pathway analysis (PINBPA) for genome-wide association studies (GWAS) was proposed in 2009. Now we release the Cytoscape app PINBPA, as a novel tool to analyze GWAS data in a network fashion.

For more information, please click this link here: http://www.pinbpa.com/#home

integrated Complex Traits Network (iCTNet)

integrated Complex Traits Network (iCTNet) is a large-scale network, assembling human disease-gene association, tissue-  gene association, disease-tissue associations, protein-DNA interactions, protein-protein interactions and drug-target  information.This network provides a new and comprehensive perspective for human genetic diseases.iCTNet works as a  plugin for Cytoscape and can be extended and combined using other Cytoscape plugins.

  For more information, please click on the link here: http://flux.cs.queensu.ca/ictnet/