Member Profile

@conference{Connolly2022,

title = {An open-source testbed for developing image-guided robotic tumor-bed inspection},

author = {Laura Connolly and Amoon Jamzad and Arash Nikniazi and Rana Poushimin and Andras Lasso and Kyle Sunderland and Tamas Ungi and Jean Michael Nunzi and John Rudan and Gabor Fichtinger and Parvin Mousavi},

year  = {2022},

date = {2022-03-22},

urldate = {2022-03-22},

booktitle = {20th Annual Symposium of the Imaging Network of Ontario (ImNO) 2022},

keywords = {},

pubstate = {published},

tppubtype = {conference}

}

@conference{nokey,

title = {Cautery state classification for navigated iKnife surgery},

author = {Joshua Ehrlich and Mark Asselin and Amoon Jamzad and Martin Kaufmann and Jessica Rodgers and John Rudan and Tamas Ungi and Parvin Mousavi and Gabor Fichtinger

},

year  = {2022},

date = {2022-03-22},

urldate = {2022-03-22},

booktitle = {20th Annual Symposium of the Imaging Network of Ontario (ImNO) 2022},

keywords = {},

pubstate = {published},

tppubtype = {conference}

}

@conference{Ehrlich2022,

title = {Determining the location of tumor classifications in breast cancer surgery},

author = {Joshua Ehrlich and Amoon Jamzad and Martin Kaufmann and Jessica Rodgers and John Rudan and Tamas Ungi and Parvin Mousavi and Gabor Fichtinger},

year  = {2022},

date = {2022-03-22},

urldate = {2022-03-22},

booktitle = {20th Annual Symposium of the Imaging Network of Ontario (ImNO) 2022},

keywords = {},

pubstate = {published},

tppubtype = {conference}

}

@conference{Zhou2022,

title = {Domain Transfer through Image-to-Image Translation in Prostate Cancer Detection},

author = {Meng Zhou and Amoon Jamzad and Jason Izard and Alexandre Menard and Robert Siemens and Parvin Mousavi},

year  = {2022},

date = {2022-03-22},

urldate = {2022-03-22},

booktitle = {20th Annual Symposium of the Imaging Network of Ontario (ImNO) 2022},

keywords = {},

pubstate = {published},

tppubtype = {conference}

}

@conference{Gilany2022,

title = {Label Noise Compensation in Prostate Cancer Classification},

author = {Mahdi Gilany and Amoon Jamzad and Minh Nguyen Nhat To and Brian Wodlinger and Purang Abolmaesumi and Parvin Mousavi},

year  = {2022},

date = {2022-03-22},

urldate = {2022-03-22},

booktitle = {20th Annual Symposium of the Imaging Network of Ontario (ImNO) 2022},

keywords = {},

pubstate = {published},

tppubtype = {conference}

}

@conference{March2022,

title = {Semi-supervised cautery detection with preprocessing in basal cell carcinoma surgical videos},

author = {Lucas March and Jessica Rodgers and Amoon Jamzad and Rebecca Hisey and Doug McKay and John Rudan and Martin Kaufmann and Kevin YM Ren and Gabor Fichtinger and Parvin Mousavi},

year  = {2022},

date = {2022-03-22},

urldate = {2022-03-22},

booktitle = {20th Annual Symposium of the Imaging Network of Ontario (ImNO) 2022},

keywords = {},

pubstate = {published},

tppubtype = {conference}

}

@conference{Wilson2022,

title = {Vision Transformers for Prostate Cancer Detection from Ultrasound},

author = {Paul Wilson and Mahdi Gilany and Amoon Jamzad and Minh Nguyen Nhat To and Brian Wodlinger and Purang Abolmaesumi and Parvin Mousavi},

year  = {2022},

date = {2022-03-22},

urldate = {2022-03-22},

booktitle = {20th Annual Symposium of the Imaging Network of Ontario (ImNO) 2022},

keywords = {},

pubstate = {published},

tppubtype = {conference}

}

@conference{Perera-Ortega2022,

title = {Unsupervised Learning for Classification of Prostate Cancer Severity},

author = {Andrea Perera-Ortega and Fahimeh Fooladgar and Minh Nguyen Nhat To and Amoon Jamzad and Parvin Mousavi and Purang Abolmaesumi},

year  = {2022},

date = {2022-03-22},

urldate = {2022-03-22},

booktitle = {20th Annual Symposium of the Imaging Network of Ontario (ImNO) - BEST PITCH AWARD},

keywords = {},

pubstate = {published},

tppubtype = {conference}

}

@conference{Lee2022b,

title = {Visualization of cancer probability maps in micro-ultrasound guided prostate biopsy},

author = {Hung-Yu Lee and Samira Sojoudi and Mahdi Gilany and Amoon Jamzad and Brian Wodlinger and Purang Abolmaesumi and Parvin Mousavi},

year  = {2022},

date = {2022-02-22},

urldate = {2022-02-22},

booktitle = {20th Annual Symposium of the Imaging Network of Ontario (ImNO) 2022},

keywords = {},

pubstate = {published},

tppubtype = {conference}

}

@conference{Kaczmarek2022,

title = {Multi-Omic Graph Transformers for Cancer Classification and Interpretation},

author = {Emily Kaczmarek and Amoon Jamzad and Tashifa Imtiaz and Jina Nanayakkara and Neil Renwick and Parvin Mousavi},

year  = {2022},

date = {2022-01-03},

booktitle = {Pacific Symposium on Biocomputing (PSB) 2022},

keywords = {},

pubstate = {forthcoming},

tppubtype = {conference}

}

@conference{Chen2021,

title = {Detecting Atrial Fibrillation in ICU Telemetry data with Weak Labels},

author = {Brian Chen and Golara Javadi and Amoon Jamzad and Alexander Hamilton and Stephanie Sibley and David Maslove and Philip Laird and and Parvin Mousavi},

year  = {2021},

date = {2021-08-06},

booktitle = {Machine Learning for Health Care (MLHC '21)},

keywords = {},

pubstate = {forthcoming},

tppubtype = {conference}

}

@conference{Thirumal2021b,

title = {Utility of High-Throughput Imaging Mass Cytometry for Cancer Research: A feasibility study},

author = {Sindhura Thirumal and Amoon Jamzad and Tiziana Cotechini and Charles Hindmarch and Celine Hardy and Charles Graham and David Berman and David R Siemens and Parvin Mousavi},

year  = {2021},

date = {2021-07-27},

booktitle = {IEEE-EMBC International Conference on Biomedical and Health Informatics (BHI)},

keywords = {},

pubstate = {published},

tppubtype = {conference}

}

@conference{Thirumal2021,

title = {TITAN: A Hyperion^{TM} Imaging System Data Analysis Software},

author = {Sindhura Thirumal and Amoon Jamzad and Tiziana Cotechini and Charles Hindmarch and Charles Graham and Parvin Mousavi and Rob Siemens

},

year  = {2021},

date = {2021-03-23},

booktitle = {The 19th Annual Symposium of the Imaging Network of Ontario (ImNO)},

keywords = {},

pubstate = {published},

tppubtype = {conference}

}

@conference{Jamzad2021,

title = {Platform-Independent Management of Histopathologic Annotations in Cancer Research: Application in High-Dimensional Metabolomic Image Analysis},

author = {Amoon Jamzad and Tamara Jamaspishvili and Rachael Iseman and Martin Kaufmann and David Berman and Parvin Mousavi},

year  = {2021},

date = {2021-03-23},

booktitle = {The 19th Annual Symposium of the Imaging Network of Ontario (ImNO)},

keywords = {},

pubstate = {published},

tppubtype = {conference}

}

@conference{Akbarifar2021b,

title = {Tissue Classification of Mass Spectrometry iKnife Data Using Graph Convolutional Networks},

author = {Faranak Akbarifar and Amoon Jamzad and Alice Santilli and Martin Kaufmann and Natasja Janssen and Laura Connolly and Kevin Ren and Kaitlin Vanderbeck and Ami Wang and Doug McKay and John F. Rudan and Gabor Fichtinger and Parvin Mousavi},

year  = {2021},

date = {2021-03-23},

booktitle = {The 19th Annual Symposium of the Imaging Network of Ontario (ImNO)},

keywords = {},

pubstate = {published},

tppubtype = {conference}

}

@conference{Santilli2021c,

title = {Domain Adaptation and Self-Supervised Learning for Surgical Margin Detection},

author = {Alice Santilli and Amoon Jamzad and Alireza Sedghi and Martin Kaufmann and Kathryn Logan and Julie Wallis and Kevin Ren and Natasja Janssen and Shaila Merchant and Jay Engel and Doug McKay and Sonal Varma and Ami Wang and Gabor Fichtinger and John F. Rudan and Parvin Mousavi},

year  = {2021},

date = {2021-03-23},

booktitle = {The 19th Annual Symposium of the Imaging Network of Ontario (ImNO)},

number = {BEST PITCH AWARD},

keywords = {},

pubstate = {published},

tppubtype = {conference}

}

@conference{Jamzad2021b,

title = {An efficient digitized annotation platform for pathology-oriented dataset generation in AI research},

author = {Amoon Jamzad and Tamara Jamaspishvili and Rachael Iseman and Martin Kaufmann and David Berman and Parvin Mousavi},

year  = {2021},

date = {2021-01-13},

booktitle = {AACR Conference on Artificial Intelligence, Diagnosis and Imaging},

keywords = {},

pubstate = {published},

tppubtype = {conference}

}

@conference{Thirumal2020b,

title = {Developing an Analysis Pipeline for Hyperion Imaging System Data},

author = {Sindhura Thirumal and Amoon Jamzad and Tiziana Cotechini and Charles Hindmarch and Parvin Mousavi},

year  = {2020},

date = {2020-10-02},

booktitle = {CSearch Conference},

keywords = {},

pubstate = {published},

tppubtype = {conference}

}

@conference{Gerolami2020c,

title = {The Effects of Elasticity and Scattering on Tissue Characterization Using Ultrasound Time Series},

author = {Justin Gerolami and Amoon Jamzad and Si Jia Li and Parvin Mousavi},

year  = {2020},

date = {2020-03-26},

booktitle = {The 18th Annual Symposium of the Imaging Network of Ontario (ImNO)},

keywords = {},

pubstate = {published},

tppubtype = {conference}

}

@conference{Sedghi2020b,

title = {Visualization of Clinically Significant Prostate Cancer Using Multi-stream U-Nets},

author = {Alireza Sedghi and Alireza Mehrtash and Amoon Jamzad and Amel Amalou and Jin Tae Kwak and Baris Turkbey and Peter Choyke and Peter Pinto and Bradford Wood and Sheng Xu and Purang Abolmaesumi and Parvin Mousavi},

year  = {2020},

date = {2020-03-26},

booktitle = {The 18th Annual Symposium of the Imaging Network of Ontario (ImNO)},

keywords = {},

pubstate = {published},

tppubtype = {conference}

}

@conference{Connolly2020,

title = {Classification of primary cancer and surrounding tissue in breast cancer xenograft models},

author = {Laura Connolly and Amoon Jamzad and Martin Kaufmann and Rachel Rubino and Alireza Sedghi and Tamas Ungi and Mark Asselin and Scott Yam and John Rudan and Christopher Nicol and Gabor Fichtinger and Parvin Mousavi

},

year  = {2020},

date = {2020-03-26},

booktitle = {The 18th Annual Symposium of the Imaging Network of Ontario (ImNO)},

keywords = {},

pubstate = {published},

tppubtype = {conference}

}

@conference{IMNO_AJ1,

title = {Cancer Cell Detection with Raman Spectroscopy: A Multidisciplinary Workflow},

author = {Amoon Jamzad and Rachel Rubino and Christine Orr and Dalila Villalobos and Sonal Varma and Gabor Fichtinger and John Rudan and Christopher Nicol and Scott Yam and Parvin Mousavi},

year  = {2020},

date = {2020-03-26},

booktitle = {The 18th Annual Symposium of the Imaging Network of Ontario (ImNO)},

keywords = {},

pubstate = {published},

tppubtype = {conference}

}

@conference{Janssen2020b,

title = {Navigated skin cancer surgery with real-time tissue characterization},

author = {Natasja N.Y. Janssen and Martin Kaufmann and Alice Santilli and Amoon Jamzad and Kaitlin Vanderbeck and Kevin Ren and Tamas Ungi and Parvin Mousavi and John F. Rudan and Doug McKay and Ami Wang and Gabor Fichtinger

},

year  = {2020},

date = {2020-03-26},

booktitle = {The 18th Annual Symposium of the Imaging Network of Ontario (ImNO)},

keywords = {},

pubstate = {published},

tppubtype = {conference}

}

@conference{Yates2020,

title = {Using a biophotonic probe for robotic tissue scanning},

author = {Lauren Yates and Laura Connolly and Amoon Jamzad and Mark Asselin and Rachel Rubino and Scott Yam and Tamas Ungi and Andras Lasso and Christopher Nicol and Parvin Mousavi and Gabor Fichtinger},

year  = {2020},

date = {2020-03-26},

booktitle = {The 18th Annual Symposium of the Imaging Network of Ontario (ImNO)},

keywords = {},

pubstate = {published},

tppubtype = {conference}

}

@conference{Thirumal2020,

title = {Developing an Analysis Pipeline for Hyperion Imaging System Data},

author = {Sindhura Thirumal and Amoon Jamzad and Tiziana Cotechini and Charles Hindmarch and Parvin Mousavi},

year  = {2020},

date = {2020-03-26},

booktitle = {The 18th Annual Symposium of the Imaging Network of Ontario (ImNO)},

keywords = {},

pubstate = {published},

tppubtype = {conference}

}

@conference{IMNO_AS,

title = {Symmetric Autoencoder for Tissue Classification of Mass Spectrometry IKnife Data},

author = {Alice Santilli and Amoon Jamzad and Natasja N.Y. Janssen and Martin Kaufmann and Laura Connolly and Kaitlin Vanderbeck and Ami Wang and Doug McKay and John F. Rudan and Gabor Fichtinger and Parvin Mousavi},

year  = {2020},

date = {2020-03-26},

booktitle = {The 18th Annual Symposium of the Imaging Network of Ontario (ImNO)},

volume = {Abstract},

number = {BEST ORAL PRESENTATION AWARD},

keywords = {},

pubstate = {published},

tppubtype = {conference}

}

@conference{Jamzad2019,

title = {Computer Assisted Cancer Cell Detection with Raman Spectroscopy: A fully multidisciplinary workflow},

author = {Amoon Jamzad and John Rudan and Gabor Fichtinger and Scott Yam and Parvin Mousavi},

year  = {2019},

date = {2019-09-18},

booktitle = {125th Anniversary Faculty of Engineering and Applied Science, Queen's University, 2019.},

keywords = {},

pubstate = {published},

tppubtype = {conference}

}

@conference{Asselin2019,

title = {Identification of the electrocautery state to enable spatially navigated intra-operative mass spectrometry tissue analysis},

author = {Mark Asselin and Amoon Jamzad and Andras Lasso and Tamas Ungi and John F. Rudan and Gabor Fichtinger},

issn = {2516-5029},

year  = {2019},

date = {2019-06-23},

booktitle = {The 12th Hamlyn Symposium on Medical Robotics on Medical Robotics},

pages = {57-58},

address = {Imperial College, London, UK.},

keywords = {},

pubstate = {published},

tppubtype = {conference}

}

@conference{7404176,

title = {Analysis of backscattered ultrasound rf echoes from adjacent scan lines for surface roughness characterization: a phantom study},

author = {Amoon Jamzad and Faranak Akbarifar and Seyed Kamaledin Setarehdan},

doi = {10.1109/ICBME.2015.7404176},

year  = {2015},

date = {2015-11-01},

booktitle = {2015 22nd Iranian Conference on Biomedical Engineering (ICBME)},

pages = {389-393},

abstract = {Ultrasonography, as a noninvasive and inexpensive routine, can be the modality of choice in roughness characterization of internal body stones for managing treatment methods. In this study, we have investigated the possibility of differentiating roughness levels utilizing backscattered RF data which presumably contain more information than the B-mode images. For this purpose, we modified a conventional medical ultrasound device and recorded RF data from a roughness phantom consisting of 4 standard sandpaper strips. We proposed that the difference of two echoes from adjacent scan lines contains information about the roughness of the imaging surface. Hence, we calculated the Euclidean distance of temporal and spectral features extracted from two adjacent echoes. Then, 3 classifiers of Bayesian, linear, and 1-Nearest Neighbor (NN) were employed for roughness differentiation. The results show that spectral features and 1-NN classifier had the best performance among others. The highest average performance of 99.17%, obtained using all features along with the 1-NN classifier, proves the feasibility of roughness discrimination by acquiring and comparing adjacent echoes.},

keywords = {},

pubstate = {published},

tppubtype = {conference}

}

@conference{Akbarifar2013,

title = {Time series analysis of the Twinkling Artifact in color Doppler sonography for surface roughness differentiation: An in vitro feasibility study},

author = {Faranak Akbarifar and Amoon Jamzad and Seyed Kamaledin Setarehdan},

year  = {2013},

date = {2013-12-18},

booktitle = {2013 20th Iranian Conference on Biomedical Engineering (ICBME)},

pages = {76-80},

keywords = {},

pubstate = {published},

tppubtype = {conference}

}

@conference{Jamzad2011,

title = {Simulation of the twinkling artifact in color flow Doppler sonography: A phase noise hypothesis validation},

author = {Amoon Jamzad and Seyed Kamaledin Setarehdan},

year  = {2011},

date = {2011-11-16},

booktitle = {2011 IEEE International Conference on Signal and Image Processing Applications (ICSIPA)},

pages = {22-27},

keywords = {},

pubstate = {published},

tppubtype = {conference}

}